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Ensure locus tags are set as labels for extension

bugSomething isn't workingSomething isn't working

HQTBAbout HQTB workflowAbout HQTB workflow

Status: Open.

Bug

#38 In draeger-lab/SPECIMEN;

· cb-Hades opened on May 27, 2025

Clearly define input format

documentationImprovements or additions to documentationImprovements or additions to documentation

help wantedExtra attention is neededExtra attention is needed

releaseIssue for a new releaseIssue for a new release

Status: Open.

Task

#37 In draeger-lab/SPECIMEN;

· cb-Hades opened on May 27, 2025

Add ModelPolisher to validation in HQTB

enhancementNew feature or requestNew feature or request

HQTBAbout HQTB workflowAbout HQTB workflow

Status: Open.

Feature

#36 In draeger-lab/SPECIMEN;

· cb-Hades opened on May 27, 2025

Improve handling of bidirectional BLAST input files

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

HQTBAbout HQTB workflowAbout HQTB workflow

Status: Open.

Feature

#34 In draeger-lab/SPECIMEN;

· cb-Hades opened on May 9, 2025

Enhance config validation

configAbout the config files (YAMLs)About the config files (YAMLs)

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#33 In draeger-lab/SPECIMEN;

· cb-Hades opened on Mar 19, 2025

Add wrapper to CMPB

CMPBAbout CMPB workflowAbout CMPB workflow

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#31 In draeger-lab/SPECIMEN;

· cb-Hades opened on Mar 19, 2025

Add more gap filling options to HQTB cleanup

enhancementNew feature or requestNew feature or request

HQTBAbout HQTB workflowAbout HQTB workflow

questionFurther information is requestedFurther information is requested

Status: Open.

Feature

#29 In draeger-lab/SPECIMEN;

· cb-Hades opened on Mar 18, 2025

Implement a consistent logging for SPECIMEN

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

Task

#27 In draeger-lab/SPECIMEN;

· cb-Hades opened on Mar 18, 2025

[BUG] COBRApy overwriting label content

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

Status: Open.

Bug

#25 In draeger-lab/SPECIMEN;

· cb-Hades opened on Mar 12, 2025

QoL for developement of config YAMLs

configAbout the config files (YAMLs)About the config files (YAMLs)

help wantedExtra attention is neededExtra attention is needed

Status: Open.

Feature

#24 In draeger-lab/SPECIMEN;

· cb-Hades opened on Mar 6, 2025

CMPB: create different levels of YAML configs

CMPBAbout CMPB workflowAbout CMPB workflow

configAbout the config files (YAMLs)About the config files (YAMLs)

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#22 In draeger-lab/SPECIMEN;

· cb-Hades opened on Jan 7, 2025

Add FROG to workflows

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#21 In draeger-lab/SPECIMEN;

· cb-Hades opened on Jan 7, 2025